| Issue Date | Title | Author(s) |
| 2013 | Biomonitoring as a prerequisite for sustainable water resources: a review of current status, opportunities and challenges to scaling up in East Africa | Masese, F.; Omukoto, J.; Nyakeya, K. |
| 2011 | Comparison of Modern and Historical Fish Catches (AD 750–1400) to Inform Goals for Marine Protected Areas and Sustainable Fisheries | McClanahan, T.; Omukoto, J. |
| 2007 | Development of a fish index of biotic integrity (IBI) for satellite lakes within Yala swamp, Lake Victoria Basin, Kenya | Omukoto, J. |
| 2024 | Disentangling the determinants of food and nutrition security from tropical small-scale fisheries: tackling hidden hunger using forgotten food | Omukoto, J. |
| 2022 | Diversity of Shallow-Water Species in Prawn Trawling: A Case Study of Malindi–Ungwana Bay, Kenya | Fondo, E.; Omukoto, J.; Wambiji, N.; Okemwa, G.; Thoya, P; Maina, G.; Kimani, E. |
| 2021 | Kenya marine fisheries: The next frontier for economic growth? | Njiru, J.; Omukoto, J.; Kimani, E.; Aura, C.; Van der Knaap, M. |
| 2021 | Large projected reductions in marine fish biomass for Kenya and Tanzania in the absence of climate mitigation | Wilson, R.; Sailley, S.; Jacobs, Z.; Kamau, J.; Mgeleka, S.; Okemwa, G.; Omukoto, J.; Osuka, K.; Ssmoilys, M.; Sauer, W.; Silas, M.; Sululu, J.; Roberts, M. |
| 2021 | Natural resource-use in the Lower Tana River Delta based on household surveys and remote sensing of land cover and land use patterns | Mwamlavya, H.; Munga, C.; Fulanda, B.; Omukoto, J.; Thoya, P.; Manyenze, F.; Groeneveld, J. |
| 2018 | Occurrence and ingestion of microplastics by zooplankton in Kenya's marine environment: first documented evidence | Mitto, C.; Ojwang, W.; Maghanga, J.; Kamau, J.; Kimeli, A.; Omukoto, J.; Ngisiange, N.; Mwaluma, J.; Ong’ada, H.; Magori, C.; Kimani, E. |
| 2018 | Participatory assessment of priority fishery profiles in an overfished urban inshore seascape in Kenya | Omukoto, J.; Owiti, H.; Mwakha, V.; Munga, C.; Wamukota, A. |
| 2014 | Propulsion-gear-based characterisation of artisanal fisheries in the Malindi-Ungwana Bay, Kenya and its use for fisheries management | Munga, C.; Omukoto, J.; Kimani, E.; Vanreusel, A. |
| 2023 | Rapid assessment of the Indian mackerel Rastrelliger kanagurta fishery in Kenya’s coastal waters | Okemwa, G.; Abubakar, A.; Fondo, E.; Omukoto, J.; Orembo, B.; Kimani, E.; Nyamora, J.; Mzingirwa, F.; Wambiji, N.; Ishmael, N |
| 2009 | Recent seawater temperature histories, status, and predictions for Madagascar’s coral reefs | McClanahan, T.; Ateweberhan, M.; Omukoto, J.; Pearson, L. |
| 2020 | Stock assessment of the Tigertooth croaker, Otolithes ruber (Bloch & Schneider, 1801) from the commercial prawn trawl fishery by-catch in coastal Kenya | Mzingirwa, F.; Nyamora, J.; Omukoto, J.; Tuda, P. |
| 2019 | Trawling effort distribution and influence of vessel monitoring system (VMS) in Malindi-Ungwana Bay: Implications for resource management and marine spatial planning in Kenya | Thoya, P.; Kaunda-Arara, B.; Omukoto, J.; Munga, C.; Kimani, E.; Tuda, A. |
