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| Issue Date | Title | Author(s) |
| 2009 | Advances in coastal ecology : people, processes and ecosystems in Kenya | Hoorweg, J.; Muthiga, N. |
| 2006 | Assessing the effectiveness of management of marine protected areas in Kenya: Experiences from the Mombasa marine park and reserve | Muthiga, N. |
| 2011 | Associations between climate stress and coral reef diversity in the western Indian Ocean | Mcclanahan, T.; Maina, J.; Muthiga, N. |
| 2014 | Biogeography and Change among Regional Coral Communities across the Western Indian Ocean | McClanahan, T.; Ateweberhan, M.; Darling, E.; Graham, N.; Muthiga, N. |
| 2015 | Cascade effects and sea-urchin overgrazing: An analysis of drivers behind the exploitation of sea urchin predators for management improvement | Wallner-Hahn, S.; de la Torre-Castro, M.; Eklof, J.; Gullstrom, M.; Muthiga, N.; Uku, J. |
| 1988 | Changes in Kenyan coral reef community structure and function due to exploitation | McClanahan, T.; Muthiga, N. |
| 2007 | Coral Reefs Under Rapid Climate Change and Ocean Acidification | Hoegh-Guldberg, O.; Mumby, PJ.; Hooten, AJ.; Steneck, RS.; Greenfield, P.; Gomez, E.; Harvell, CD.; Sale, PF.; Edwards, AJ.; Caldeira, K.; Knowlton, N.; Eakin, CM.; Iglesias-Prieto, R.; Muthiga, N.; Bradbury, RH.; Dubi, A.; Hatziolos, ME. |
| 2021 | COVID-19 impacts on coastal communities in Kenya | Lau, J.; Sutcliffe, S.; Barnes, M.; Mbaru, E.; Muly, I.; Muthiga, N.; Wanyonyi, S.; Cinner, J. |
| 1998 | East Africa: Coral reef programs of eastern Africa and the Western Indian Ocean | Muthiga, N.; Bigot, L.; Nilsson, A. |
| 2010 | Ecosystem Services as a Common Language for Coastal Ecosystem-Based Management | Granek, E.; Polasky, S.; Kappel, C.; Reed, DJ.; Stoms, D.; Koch, E.; Kennedy, C.; Cramer, L.; Hacker, S.; Barbier, E.; Aswani, S.; Ruckelshaus, M.; Perillo, G.; Silliman, B.; Muthiga, N.; Bael, D.; Wolanski, E. |
| 1986 | Edible crabs of Kenya. | Muthiga, N. |
| 1997 | The effect of visitor use on the hard coral communities of the Kisite Marine Park, Kenya | Muthiga, N.; McClanahan, T. |
| 1987 | The Effects of Salinity Stress on the Rates of Aerobic Respiration and Photosynthesis in the Hermatypic Coral Siderastrea siderea | Muthiga, N.; Szmant, A. |
| 2005 | Effects of seasonality and population density on the reproduction of the Indo-Pacific echinoid Echinometra mathaei in Kenyan coral reef lagoons | Muthiga, N.; Jaccarini, V. |
| 2008 | The effects of temperature and light on the gametogenesis and spawning of four sea urchin and one sea cucumber species on coral reefs in Kenya | Muthiga, N.; Kawaka, J. |
| 2016 | Elasticity in ecosystem services: exploring the variable relationship between ecosystems and human well-being | Daw, T.; Hicks, C.; Katrina, B.; Chaigneau, T.; Fraser, J.; Cheung, W.; Rosendo, S.; Crona, B.; Coulthard, S.; Sandbrook, C.; Perry, C.; Bandeira, S.; Muthiga, N.; Schulte-Herbrüggen, B.; Bosire, J.; McClanahan, T. |
| 2016 | Establishment of Community Managed Fisheries' Closures in Kenya: Early Evolution of the Tengefu Movement | McClanahan, T.; Muthiga, N.; Abunge, C. |
| 2020 | Highly variable taxa-specific coral bleaching responses to thermal stresses | McClanahan, T.; Darling, E.; Maina, J.; Muthiga, N.; D’agata, S.; Leblond, J.; Arthur, R.; Jupiter, S.; Wilson, S.; Mangubhai, S.; Ussi, A.; Guillaume, M.; Humphries, A.; Patankar, V.; Shedrawi, G.; Pagu, J; Grimsditch, G. |
| 2019 | Implementing a social-ecological systems framework for conservation monitoring: lessons from a multi-country coral reef program | Gurney, G.; Darling, E.; Jupiter, S.; Mangubhai, S.; McClanahan, T.; Lestari, P.; Pardede, S.; Campbell, S.; Fox, M.; Naisilisili, W.; Muthiga, N.; D’agata, S.; Holmes, K.; Rossi, N. |
| 2019 | Information access and knowledge exchange in co-managed coral reef fisheries | Barnes, M.; Mbaru, E.; Muthiga, N. |
